The reason behind this is that when VTP servers are configured, they keep on exchanging info. Each time information is changed, the VTP version is increased by one. The VTP information with the highest number is treated as the most recent. So once you put this back, it replicates all the information on the other servers and you get information on all the servers across the network which you actually don't need.
To overcome this, before playing on any Layer 3 switch configured as a VTP server, change the VTP domain to some other name. Then, before putting it back online, change it to the old domain name.
The command is:
set vtp domain
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This was first published in September 2002